Run the java script that reconstitutes CPT4 concepts directly from the R console. CPT4 will not be loaded into Postgres If this is not run beforehand.
prepare_cpt4(path_to_csvs, umls_api_key, verbose = TRUE)
| path_to_csvs | Path to folder containing the unpacked vocabularies as csv files, downloaded as a zip from athena.ohdsi.org. |
|---|---|
| umls_api_key | API Key given at UMLS Licensee Profile. |
| verbose | If TRUE, prints back activity in the R console as it is occurring. |